Coursework, Pc sciences and Data know-how
You want to perceive the use and distribution of Gene Ontology phrases in several
subsections of Uniprot. Uniprot shops this information with every of its entries, every entry
having doubtlessly many Gene Ontology phrases. So, we want to reformat this information into
XML to be used with different downstream analytical instruments.
You need to, due to this fact, obtain all of Uniprot in some appropriate format (you could
select which of their normal obtain codecs you want to use). Extract from this
solely the information related to a single mannequin organism. Reorganise the information, so
that every GO time period is related to the information during which it happens. Save this information
out as an XML file. This course of should be absolutely automated, and run with out guide
intervention, in order that it will probably rerun as needed.
Write a brief report describing your methodology and the rationale behind it. You
ought to submit this report and any related scripts as your coursework.
Your report needs to be a most of 1000 phrases in size. You’ll rating effectively by
use of libraries
clear variable and performance names
*- you should utilize linux and python
1- to extract cretin info
Three- save by XML
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